{ "_id": "6a23ea9aa1338011a79ec1fa", "Package": "dscoreMSM", "Type": "Package", "Title": "Survival Proximity Score Matching in Multi-State Survival Model", "Version": "0.1.0", "Authors@R": "c(person(\"Atanu\", \"Bhattacharjee\",\nemail = \"atanustat@gmail.com\",\nrole = c(\"aut\", \"cre\", \"ctb\")),\nperson(\"Bhrigu Kumar\", \"Rajbongshi\", role = c(\"aut\", \"ctb\")),\nperson(\"Gajendra K\", \"Vishwakarma\", role = c(\"aut\", \"ctb\")))", "Maintainer": "Atanu Bhattacharjee ", "Description": "Implements survival proximity score matching in\nmulti-state survival models. Includes tools for simulating\nsurvival data and estimating transition-specific coxph models\nwith frailty terms. The primary methodological work on\nmultistate censored data modeling using propensity score\nmatching has been published by Bhattacharjee et al.(2024)\n.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-06 09:34:43 UTC", "User": "root" }, "Author": "Atanu Bhattacharjee [aut, cre, ctb], Bhrigu Kumar Rajbongshi\n[aut, ctb], Gajendra K Vishwakarma [aut, ctb]", "Config/pak/sysreqs": "cmake make jags libicu-dev libuv1-dev", "Repository": "https://atanubhattacharjee.r-universe.dev", "Date/Publication": "2024-12-13 16:40:02 UTC", "RemoteUrl": "https://github.com/cran/dscoreMSM", "RemoteRef": "HEAD", "RemoteSha": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "MD5sum": "dcb7a60686f400f5097d7e12fd6701a0", "_user": "atanubhattacharjee", "_type": "src", "_file": "dscoreMSM_0.1.0.tar.gz", "_fileid": "355c47691663d849d8eaa06b32a5ca51c3c01c5510dda2913dd114a5424b185f", "_filesize": 421492, "_sha256": "355c47691663d849d8eaa06b32a5ca51c3c01c5510dda2913dd114a5424b185f", "_created": "2026-06-06T09:34:43.000Z", "_published": "2026-06-06T09:38:34.378Z", "_distro": "noble", "_jobs": [ { "job": 79867901156, "time": 177, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7453306612" }, { "job": 79867901151, "time": 194, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7453308621" }, { "job": 79867901157, "time": 134, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7453302282" }, { "job": 79867901170, "time": 103, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7453299349" }, { "job": 79867714086, "time": 227, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7453288468" }, { "job": 79867901154, "time": 136, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7453302212" }, { "job": 79867901168, "time": 144, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7453303759" }, { "job": 79867901167, "time": 115, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7453300468" }, { "job": 79867901177, "time": 114, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7453300320" } ], "_buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/dscoreMSM", "_commit": { "id": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "author": "Atanu Bhattacharjee ", "committer": "cran-robot ", "message": "version 0.1.0\n", "time": 1734108002 }, "_maintainer": { "name": "Atanu Bhattacharjee", "email": "atanustat@gmail.com", "login": "atanubhattacharjee", "description": "Assistant Professor Biostatistics", "uuid": 22411298 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "rjags", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "timeROC", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "mstate", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "atanubhattacharjee", "count": 1, "uuid": 22411298 } ], "_userbio": { "uuid": 22411298, "type": "user", "name": "Atanu Bhattacharjee", "description": "Assistant Professor Biostatistics" }, "_downloads": { "count": 110, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dscoreMSM" }, "_searchresults": 0, "_topics": [ "jags", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/dscoreMSM.html", "manual.pdf" ], "_realowner": "atanubhattacharjee", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2024-12-13" } ], "_exports": [ "cphGM", "dscore", "ggplot_roc", "ggplot_surv", "simfdata" ], "_datasets": [ { "name": "EBMTdata", "title": "European Bone Marrow Transplantation data obtained from 'mstate' r package", "object": "EBMTdata", "class": [ "data.frame" ], "fields": [ "id", "prtime", "prstat", "rfstime", "rfsstat", "dissub", "age", "drmatch", "tcd", "x1", "x2", "x3", "x4" ], "rows": 2204, "table": true, "tojson": true }, { "name": "EBMTupdate", "title": "European Bone Marrow Transplantation data obtained from 'mstate' r package. This is the updated data obtained after applying SPSM.", "object": "EBMTupdate", "class": [ "data.frame" ], "fields": [ "id", "prtime", "prstat", "rfstime", "rfsstat", "dissub", "age", "drmatch", "tcd", "x1", "x2", "x3", "x4" ], "rows": 2204, "table": true, "tojson": true }, { "name": "simulated_data", "title": "Simulated multistate data", "object": "simulated_data", "class": [ "data.frame" ], "fields": [ "id", "status", "time", "x1", "x2", "x3", "x4" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "cphGM", "title": "CoxPH model with parametric baseline and frailty terms", "topics": [ "cphGM" ] }, { "page": "dscore", "title": "Survival Proximity Score matching for MSM", "topics": [ "dscore" ] }, { "page": "EBMTdata", "title": "European Bone Marrow Transplantation data obtained from 'mstate' r package", "topics": [ "EBMTdata" ] }, { "page": "EBMTupdate", "title": "European Bone Marrow Transplantation data obtained from 'mstate' r package. This is the updated data obtained after applying SPSM.", "topics": [ "EBMTupdate" ] }, { "page": "expbh", "title": "Exponential baseline hazard", "topics": [ "expbh" ] }, { "page": "ggplot_roc", "title": "Reciever Operating Curve", "topics": [ "ggplot_roc" ] }, { "page": "ggplot_surv", "title": "Survival probability plot", "topics": [ "ggplot_surv" ] }, { "page": "gompbh", "title": "Gompartz baseline hazard", "topics": [ "gompbh" ] }, { "page": "print.cphGM", "title": "print function for cphGM", "topics": [ "print.cphGM" ] }, { "page": "simfdata", "title": "simulation of survival data", "topics": [ "simfdata" ] }, { "page": "simulated_data", "title": "Simulated multistate data", "topics": [ "simulated_data" ] }, { "page": "weibulbh", "title": "Weibull baseline hazard", "topics": [ "weibulbh" ] } ], "_rundeps": [ "backports", "base64enc", "bslib", "cachem", "checkmate", "cli", "cluster", "cmprsk", "coda", "codetools", "colorspace", "cpp11", "data.table", "diagram", "digest", "doParallel", "evaluate", "farver", "fastmap", "fontawesome", "foreach", "foreign", "Formula", "fs", "future", "future.apply", "ggplot2", "glmnet", "globals", "glue", "gridExtra", "gtable", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "isoband", "iterators", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "lattice", "lava", "lifecycle", "listenv", "magrittr", "MASS", "Matrix", "MatrixModels", "memoise", "mets", "mime", "mstate", "multcomp", "mvtnorm", "nlme", "nnet", "numDeriv", "parallelly", "pec", "plotrix", "polspline", "prodlim", "progressr", "Publish", "quantreg", "R6", "ranger", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "riskRegression", "rjags", "rlang", "rmarkdown", "rms", "rpart", "rstudioapi", "S7", "sandwich", "sass", "scales", "shape", "SparseM", "SQUAREM", "stringi", "stringr", "survival", "TH.data", "timereg", "timeROC", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "yaml", "zoo" ], "_sysdeps": [ { "shlib": "libjags", "package": "jags", "headers": "jags", "source": "jags", "version": "4.3.2-2.2404.0", "name": "jags", "homepage": "https://mcmc-jags.sourceforge.io", "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler. It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary." }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "dscoreMSM.Rmd", "filename": "dscoreMSM.html", "title": "R package dscoreMSM", "engine": "knitr::rmarkdown", "headings": [ "Simulation of example survival data", "Simulating a Multistate dataset with three state:", "Application on the EBMT dataset" ], "created": "2024-12-13 16:40:02", "modified": "2024-12-13 16:40:02", "commits": 1 } ], "_score": 2, "_indexed": true, "_nocasepkg": "dscoremsm", "_universes": [ "atanubhattacharjee" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-06-06T09:37:16.000Z", "distro": "noble", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "3330ca1d9fe632f0cafd9e7c46f9d2e7e4f2f15e7c68b063568f3ba7882a0a95", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" }, { "r": "4.6.0", "os": "linux", "version": "0.1.0", "date": "2026-06-06T09:37:37.000Z", "distro": "noble", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "42ce092fe21e1ece07f28063562f8c81c7197ed7bc251232dd962bcf392fe5e9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" }, { "r": "4.5.3", "os": "mac", "version": "0.1.0", "date": "2026-06-06T09:36:44.000Z", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "9690c442511ba2403694089131dae025bf5ddd291186fc25fe23e796f942fee1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" }, { "r": "4.6.0", "os": "mac", "version": "0.1.0", "date": "2026-06-06T09:36:23.000Z", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "cb893f01fc9b5c9a4dc66368fac05464ebcc1a11c93ac4f0a6533bc0ef0dab0d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0", "date": "2026-06-06T09:37:17.000Z", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "33b660482e166270e83e0dfe3ed5bec26a7abb305cdee5de3f93e10fa2c1d292", "status": "success", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" }, { "r": "4.7.0", "os": "win", "version": "0.1.0", "date": "2026-06-06T09:36:43.000Z", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "aac96fc80edf6ec92206a3e381170638388e439d0fb70a846f24c2e9ccd733b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" }, { "r": "4.5.3", "os": "win", "version": "0.1.0", "date": "2026-06-06T09:36:11.000Z", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "c306a7a3a8c459b50cc1d4e53eaf94a3e56cc6d214eb7730a93d018da9ac84b6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" }, { "r": "4.6.0", "os": "win", "version": "0.1.0", "date": "2026-06-06T09:36:10.000Z", "commit": "57afab2d9f6148b5a35c023427ebc8a650d3ef74", "fileid": "a4bd3af9c302481d4303a71c922a66424b96b13de7804735f57cb74d954a784f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/atanubhattacharjee/actions/runs/27058723135" } ] }