Package: afthd 1.1.0

afthd: Accelerated Failure Time for High Dimensional Data with MCMC

Functions for Posterior estimates of Accelerated Failure Time(AFT) model with MCMC and Maximum likelihood estimates of AFT model without MCMC for univariate and multivariate analysis in high dimensional gene expression data are available in this 'afthd' package. AFT model with Bayesian framework for multivariate in high dimensional data has been proposed by Prabhash et al.(2016) <doi:10.21307/stattrans-2016-046>.

Authors:Atanu Bhattacharjee [aut, cre, ctb], Gajendra Kumar Vishwakarma [aut, ctb], Pragya Kumari [aut, ctb]

afthd_1.1.0.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
afthd/json (API)

# Install 'afthd' in R:

install.packages('afthd', repos = c('https://atanubhattacharjee.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

Datasets:

hdata - Head and neck cancer data

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

jags cpp

1.48 score 1 packages 7 scripts 403 downloads 14 exports 57 dependencies

Last updated from:5ec629860e. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	184
source / vignettes	OK	199
linux-release-x86_64	OK	184
macos-release-arm64	OK	123
macos-oldrel-arm64	OK	146
windows-devel	OK	154
windows-release	OK	153
windows-oldrel	OK	153
wasm-release	OK	147

Exports:aftbybmv lgnbymv lgnbyuni lgstbymv lgstbyuni pvaft rglaft rglwbysm rglwbysu wbyAgmv wbyscrkm wbyscrku wbysmv wbysuni

Dependencies:abind bbmle bdsmatrix bitops boot caTools cli coda codetools cpp11 dplyr fastGHQuad foreach generics glmnet glue iterators lattice lifecycle lsoda lubridate magrittr MASS Matrix mgcv mvtnorm nlme numDeriv photobiology pillar pkgconfig plyr polynom purrr R2jags R2WinBUGS R6 Rcpp RcppArmadillo RcppEigen rjags rlang rstpm2 shape splus2R stringi stringr SunCalcMeeus survival tibble tidyr tidyselect timechange utf8 vctrs withr zoo

Help page	Topics
Bayesian multivariate analysis of parametric AFT model with minimum deviance (DIC) among weibull, log normal and log logistic distribution.	aftbybmv
Head and neck cancer data	hdata
Bayesian multivariate analysis of AFT model with log normal distribution.	lgnbymv
Bayesian univariate analysis of AFT model with log normal distribution.	lgnbyuni
Multivariate estimates of AFT model with log logistic distribution using MCMC.	lgstbymv
Univariate estimates of AFT model with log logistic distribution using MCMC.	lgstbyuni
Estimates of univariate covariates using Accelerated Failure time (AFT) model without MCMC.	pvaft
Estimates of selected univariate covariates(using regularization) in AFT model without MCMC.	rglaft
Bayesian multivariate analysis of AFT model for selected covariates using regularization method.	rglwbysm
Bayesian univariate analysis of AFT model for selected covariates using regularization method.	rglwbysu
Multivariate estimates of AFT model with weibull distribution using MCMC that supports augmented data.	wbyAgmv
Bayesian multivariate estimates for competing risk gene expression data using AFT model.	wbyscrkm
Bayesian univariate estimates for competing risk gene expression data using AFT model.	wbyscrku
Posterior multivariate estimates of AFT model with weibull distribution using MCMC.	wbysmv
Posterior univariate estimates of AFT model with weibull distribution using MCMC.	wbysuni

Package: afthd 1.1.0

afthd: Accelerated Failure Time for High Dimensional Data with MCMC

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Help Manual

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